IL_6BOK_174

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

6BOK|1|DB|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_174 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.2251

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6BOK|1|DB|C|43
6BOK|1|DB|G|44
6BOK|1|DB|U|45
*
6BOK|1|DB|G|396
6BOK|1|DB|A|397
6BOK|1|DB|C|398
6BOK|1|DB|G|399

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S16

Chain OC

30S ribosomal protein S4