IL_6BOK_175

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

6BOK|1|DB|C|48, 6BOK|1|DB|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_175 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.106

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6BOK|1|DB|C|47
6BOK|1|DB|C|48
6BOK|1|DB|U|49
6BOK|1|DB|A|50
6BOK|1|DB|A|51
6BOK|1|DB|G|52
*
6BOK|1|DB|U|359
6BOK|1|DB|A|360
6BOK|1|DB|G|361

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain WC

30S ribosomal protein S12