IL_6BOK_177

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGUG*CG

Length

6 nucleotides

Bulged bases

6BOK|1|DB|G|64, 6BOK|1|DB|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_177 not in the Motif Atlas

Geometric match to IL_6CZR_117

Geometric discrepancy: 0.1355

The information below is about IL_6CZR_117

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6BOK|1|DB|C|63
6BOK|1|DB|G|64
6BOK|1|DB|U|65
6BOK|1|DB|G|66
*
6BOK|1|DB|C|103
6BOK|1|DB|G|104

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain ED

30S ribosomal protein S20