IL_6BOK_186

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

6BOK|1|DB|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_186 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.2383

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6BOK|1|DB|U|367
6BOK|1|DB|U|368
6BOK|1|DB|C|369
*
6BOK|1|DB|G|392
6BOK|1|DB|A|393

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S16