IL_6BOK_197

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_197 not in the Motif Atlas

Geometric match to IL_4LFB_025

Geometric discrepancy: 0.0824

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

6BOK|1|DB|G|597
6BOK|1|DB|U|598
*
6BOK|1|DB|A|640
6BOK|1|DB|U|641
6BOK|1|DB|A|642
6BOK|1|DB|C|643

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S17

Chain SC

30S ribosomal protein S8