IL_6BOK_209

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_209 not in the Motif Atlas

Geometric match to IL_4V88_445

Geometric discrepancy: 0.1333

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6BOK|1|DB|G|953
6BOK|1|DB|G|954
*
6BOK|1|DB|C|1226
6BOK|1|DB|A|1227
6BOK|1|DB|C|1228

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S19

Chain HD

Peptide chain release factor 1

Chain LC

Small subunit ribosomal RNA fragment; SSU rRNA fragment

Chain XC

30S ribosomal protein S13