IL_6BOK_213

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_213 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1351

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6BOK|1|DB|G|1050
6BOK|1|DB|C|1051
6BOK|1|DB|U|1052
*
6BOK|1|DB|G|1206
6BOK|1|DB|2MG|1207
6BOK|1|DB|C|1208

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain HD

Peptide chain release factor 1

Chain NC

30S ribosomal protein S3

Chain YC

30S ribosomal protein S14 type Z