IL_6BOK_248
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOK_248 not in the Motif Atlas
- Homologous match to IL_4WF9_017
- Geometric discrepancy: 0.0887
- The information below is about IL_4WF9_017
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6BOK|1|EB|C|564
6BOK|1|EB|C|565
6BOK|1|EB|U|566
*
6BOK|1|EB|A|575
6BOK|1|EB|U|576
6BOK|1|EB|G|577
Current chains
- Chain EB
- 23S ribosomal RNA
Nearby chains
- Chain FC
- 50S ribosomal protein L32
- Chain JB
- 50S ribosomal protein L4
- Chain PB
- 50S ribosomal protein L15
- Chain UB
- 50S ribosomal protein L20
- Chain VB
- 50S ribosomal protein L21
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