IL_6BOK_253

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6BOK|1|EB|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_253 not in the Motif Atlas

Geometric match to IL_7RQB_020

Geometric discrepancy: 0.0953

The information below is about IL_7RQB_020

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

42

Unit IDs

6BOK|1|EB|G|702
6BOK|1|EB|U|703
*
6BOK|1|EB|G|728
6BOK|1|EB|G|729
6BOK|1|EB|C|730

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L2