IL_6BOK_258

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6BOK|1|EB|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_258 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.1958

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6BOK|1|EB|C|844
6BOK|1|EB|G|845
6BOK|1|EB|C|846
*
6BOK|1|EB|G|931
6BOK|1|EB|G|932
6BOK|1|EB|A|933
6BOK|1|EB|G|934

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L30