IL_6BOK_262

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_262 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.0759

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

6BOK|1|EB|G|864
6BOK|1|EB|C|865
6BOK|1|EB|A|866
6BOK|1|EB|C|867
6BOK|1|EB|U|868
*
6BOK|1|EB|A|909
6BOK|1|EB|A|910
6BOK|1|EB|A|911
6BOK|1|EB|C|912

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain FB

5S ribosomal RNA; 5S rRNA

Chain QB

50S ribosomal protein L16

Chain ZB

50S ribosomal protein L25