IL_6BOK_274

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6BOK|1|EB|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_274 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1116

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6BOK|1|EB|G|1031
6BOK|1|EB|A|1032
6BOK|1|EB|U|1033
6BOK|1|EB|G|1034
*
6BOK|1|EB|C|1121
6BOK|1|EB|G|1122
6BOK|1|EB|C|1123

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L36

Chain LB

50S ribosomal protein L6

Chain QB

50S ribosomal protein L16