IL_6BOK_279

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

6BOK|1|EB|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_279 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1899

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6BOK|1|EB|C|1202
6BOK|1|EB|G|1203
6BOK|1|EB|A|1204
6BOK|1|EB|U|1205
6BOK|1|EB|G|1206
*
6BOK|1|EB|U|1240
6BOK|1|EB|A|1241
6BOK|1|EB|A|1242
6BOK|1|EB|G|1243

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L4

Chain PB

50S ribosomal protein L15