IL_6BOK_287

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_287 not in the Motif Atlas

Geometric match to IL_4WF9_051

Geometric discrepancy: 0.296

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|C|1417
6BOK|1|EB|G|1418
6BOK|1|EB|A|1419
6BOK|1|EB|U|1420
6BOK|1|EB|G|1421
*
6BOK|1|EB|C|1577
6BOK|1|EB|U|1578
6BOK|1|EB|A|1579
6BOK|1|EB|A|1580
6BOK|1|EB|G|1581

Current chains

Chain EB

23S ribosomal RNA

Nearby chains