IL_6BOK_327

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

6BOK|1|EB|A|2572, 6BOK|1|EB|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_327 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.1

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6BOK|1|EB|C|2512
6BOK|1|EB|G|2513
*
6BOK|1|EB|C|2571
6BOK|1|EB|A|2572
6BOK|1|EB|C|2573
6BOK|1|EB|G|2574

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HD

Peptide chain release factor 1

Chain IB

50S ribosomal protein L3

Chain NB

50S ribosomal protein L13