IL_6BOK_330

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6BOK|1|EB|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_330 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.3933

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6BOK|1|EB|C|2591
6BOK|1|EB|G|2592
*
6BOK|1|EB|C|2601
6BOK|1|EB|A|2602
6BOK|1|EB|G|2603

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L27

Chain HB

50S ribosomal protein L2

Chain HD

Peptide chain release factor 1

Chain LC

Small subunit ribosomal RNA fragment; SSU rRNA fragment