Loop IL_6BOK

3D structure

PDB id: 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å

Loop

Sequence: CUAGGGAACCCGGGU*GCCUGGGGUGCCCCGCGAGGGGAGCCCUAG
Length: 45 nucleotides
Bulged bases: 6BOK|1|A|U|1025, 6BOK|1|A|C|1027, 6BOK|1|A|C|1028|||C, 6BOK|1|A|G|1029
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6BOK|1|A|C|998|||B
6BOK|1|A|U|999
6BOK|1|A|A|1000
6BOK|1|A|G|1001
6BOK|1|A|G|1002
6BOK|1|A|G|1003
6BOK|1|A|A|1004
6BOK|1|A|A|1005
6BOK|1|A|C|1006
6BOK|1|A|C|1007
6BOK|1|A|C|1008
6BOK|1|A|G|1009
6BOK|1|A|G|1010
6BOK|1|A|G|1011
6BOK|1|A|U|1012
*
6BOK|1|A|G|1017
6BOK|1|A|C|1018
6BOK|1|A|C|1019
6BOK|1|A|U|1020
6BOK|1|A|G|1021
6BOK|1|A|G|1022
6BOK|1|A|G|1023
6BOK|1|A|G|1024
6BOK|1|A|U|1025
6BOK|1|A|G|1026
6BOK|1|A|C|1027
6BOK|1|A|C|1028|||A
6BOK|1|A|C|1028|||B
6BOK|1|A|C|1028|||C
6BOK|1|A|G|1029
6BOK|1|A|C|1030
6BOK|1|A|G|1031
6BOK|1|A|A|1032|||A
6BOK|1|A|G|1032|||B
6BOK|1|A|G|1032|||C
6BOK|1|A|G|1033
6BOK|1|A|G|1034
6BOK|1|A|A|1035
6BOK|1|A|G|1036
6BOK|1|A|C|1037
6BOK|1|A|C|1038
6BOK|1|A|C|1039
6BOK|1|A|U|1040
6BOK|1|A|A|1041
6BOK|1|A|G|1042

Current chains

Chain A: 16S ribosomal RNA

Nearby chains

Chain AB: 30S ribosomal protein S19
Chain VA: 30S ribosomal protein S14 type Z

IL_6BOK_347