IL_6BOK_380

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_380 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1452

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6BOK|1|DB|C|1259
6BOK|1|DB|C|1260
6BOK|1|DB|A|1261
6BOK|1|DB|C|1262
*
6BOK|1|DB|G|1273
6BOK|1|DB|G|1274
6BOK|1|DB|A|1275
6BOK|1|DB|G|1276

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S19

Chain FD

30S ribosomal protein Thx