IL_6BOK_381

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_381 not in the Motif Atlas

Homologous match to IL_9DFE_049

Geometric discrepancy: 0.1271

The information below is about IL_9DFE_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

6BOK|1|EB|G|1310
6BOK|1|EB|G|1311
6BOK|1|EB|U|1312
6BOK|1|EB|U|1313
*
6BOK|1|EB|A|1603
6BOK|1|EB|C|1604

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L34

Chain XB

50S ribosomal protein L23