IL_6BU8_001

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_001 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.1119

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BU8|1|01|G|24
6BU8|1|01|U|25
6BU8|1|01|G|26
6BU8|1|01|G|27
6BU8|1|01|A|28
6BU8|1|01|U|29
6BU8|1|01|G|30
*
6BU8|1|01|C|510
6BU8|1|01|U|511
6BU8|1|01|G|512
6BU8|1|01|A|513
6BU8|1|01|A|514
6BU8|1|01|A|515
6BU8|1|01|C|516

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L20

Chain 21

50S ribosomal protein L22

Chain 30

50S ribosomal protein L32