IL_6BU8_008

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_008 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.2371

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6BU8|1|01|C|269
6BU8|1|01|A|270
6BU8|1|01|G|271
*
6BU8|1|01|C|366
6BU8|1|01|G|367
6BU8|1|01|A|368
6BU8|1|01|U|369
6BU8|1|01|G|370

Current chains

Chain 01

23S ribosomal RNA

Nearby chains