IL_6BU8_013
3D structure
- PDB id
- 6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with S1 domains 1 and 2 (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BU8_013 not in the Motif Atlas
- Geometric match to IL_5MWI_008
- Geometric discrepancy: 0.1321
- The information below is about IL_5MWI_008
- Detailed Annotation
- Isolated non-canonical cWW
- Broad Annotation
- Isolated non-canonical cWW
- Motif group
- IL_44258.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 261
Unit IDs
6BU8|1|01|C|564
6BU8|1|01|C|565
6BU8|1|01|U|566
*
6BU8|1|01|A|575
6BU8|1|01|U|576
6BU8|1|01|G|577
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L15
- Chain 19
- 50S ribosomal protein L20
- Chain 20
- 50S ribosomal protein L21
- Chain 30
- 50S ribosomal protein L32
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