IL_6BU8_028

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_028 not in the Motif Atlas

Homologous match to IL_5J7L_273

Geometric discrepancy: 0.1169

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW

Broad Annotation

No text annotation

Motif group

IL_44258.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

261

Unit IDs

6BU8|1|01|U|870
6BU8|1|01|U|871
6BU8|1|01|U|872
*
6BU8|1|01|A|905
6BU8|1|01|U|906
6BU8|1|01|G|907

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L16