3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6BU8|1|01|A|1127
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BU8_036 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.1274
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6BU8|1|01|G|1024
6BU8|1|01|G|1025
6BU8|1|01|G|1026
6BU8|1|01|A|1027
6BU8|1|01|A|1028
6BU8|1|01|A|1029
6BU8|1|01|C|1030
*
6BU8|1|01|G|1124
6BU8|1|01|G|1125
6BU8|1|01|A|1126
6BU8|1|01|A|1127
6BU8|1|01|G|1128
6BU8|1|01|A|1129
6BU8|1|01|U|1130
6BU8|1|01|G|1131
6BU8|1|01|U|1132
6BU8|1|01|A|1133
6BU8|1|01|A|1134
6BU8|1|01|C|1135
6BU8|1|01|G|1136
6BU8|1|01|G|1137
6BU8|1|01|G|1138
6BU8|1|01|G|1139
6BU8|1|01|C|1140

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 02
5S ribosomal RNA; 5S rRNA
Chain 05
50S ribosomal protein L3
Chain 12
50S ribosomal protein L13
Chain 15
50S ribosomal protein L16
Chain 34
50S ribosomal protein L36

Coloring options:


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