IL_6BU8_063

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6BU8|1|01|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_063 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.09

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6BU8|1|01|C|1686
6BU8|1|01|G|1687
6BU8|1|01|U|1688
6BU8|1|01|A|1689
6BU8|1|01|A|1690
6BU8|1|01|C|1691
*
6BU8|1|01|G|1696
6BU8|1|01|G|1697
6BU8|1|01|A|1698
6BU8|1|01|G|1699
6BU8|1|01|A|1700
6BU8|1|01|A|1701
6BU8|1|01|G|1702

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain A

Small subunit ribosomal RNA; SSU rRNA