IL_6BU8_064

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6BU8|1|01|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1543

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6BU8|1|01|U|1712
6BU8|1|01|A|1713
6BU8|1|01|U|1714
6BU8|1|01|G|1715
6BU8|1|01|U|1716
6BU8|1|01|A|1717
6BU8|1|01|G|1718
*
6BU8|1|01|U|1742
6BU8|1|01|G|1743
6BU8|1|01|A|1744
6BU8|1|01|A|1745
6BU8|1|01|A|1746

Current chains

Chain 01

23S ribosomal RNA

Nearby chains