IL_6BU8_073

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6BU8|1|01|A|1938, 6BU8|1|01|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_073 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1474

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

6BU8|1|01|C|1934
6BU8|1|01|G|1935
6BU8|1|01|A|1936
6BU8|1|01|A|1937
6BU8|1|01|A|1938
6BU8|1|01|U|1939
6BU8|1|01|U|1940
6BU8|1|01|C|1941
6BU8|1|01|C|1942
6BU8|1|01|U|1943
6BU8|1|01|U|1944
6BU8|1|01|G|1945
*
6BU8|1|01|C|1961
6BU8|1|01|C|1962
6BU8|1|01|U|1963
6BU8|1|01|G|1964

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Y

Transfer RNA; tRNA