3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BU8_089 not in the Motif Atlas
Geometric match to IL_7RQB_094
Geometric discrepancy: 0.1853
The information below is about IL_7RQB_094
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform; mini C-loop
Motif group
IL_92788.2
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
14

Unit IDs

6BU8|1|01|A|2459
6BU8|1|01|U|2460
6BU8|1|01|A|2461
*
6BU8|1|01|U|2489
6BU8|1|01|G|2490
6BU8|1|01|U|2491
6BU8|1|01|U|2492
6BU8|1|01|U|2493

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L16
Chain Y
Transfer RNA; tRNA

Coloring options:


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