IL_6BU8_093

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6BU8|1|01|A|2572, 6BU8|1|01|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_093 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.1399

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6BU8|1|01|C|2512
6BU8|1|01|A|2513
*
6BU8|1|01|U|2571
6BU8|1|01|A|2572
6BU8|1|01|C|2573
6BU8|1|01|G|2574

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 12

50S ribosomal protein L13

Chain Y

Transfer RNA; tRNA