IL_6BU8_097

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_097 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.1216

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.3

Basepair signature

cWW-cHS-tWH-cWW-R-L-cWW-tHS-L-R

Number of instances in this motif group

5

Unit IDs

6BU8|1|01|C|2652
6BU8|1|01|U|2653
6BU8|1|01|A|2654
6BU8|1|01|G|2655
6BU8|1|01|U|2656
6BU8|1|01|A|2657
6BU8|1|01|C|2658
*
6BU8|1|01|G|2663
6BU8|1|01|G|2664
6BU8|1|01|A|2665
6BU8|1|01|C|2666
6BU8|1|01|C|2667
6BU8|1|01|G|2668

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6