IL_6BU8_100

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

6BU8|1|01|C|2712, 6BU8|1|01|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_100 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3518

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6BU8|1|01|G|2694
6BU8|1|01|U|2695
6BU8|1|01|U|2696
*
6BU8|1|01|A|2711
6BU8|1|01|C|2712
6BU8|1|01|U|2713
6BU8|1|01|G|2714
6BU8|1|01|C|2715

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L17

Chain 18

50S ribosomal protein L19