IL_6BU8_127

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

6BU8|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_127 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.1638

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.18

Basepair signature

cWW-L-cWW

Number of instances in this motif group

122

Unit IDs

6BU8|1|A|U|367
6BU8|1|A|U|368
6BU8|1|A|G|369
*
6BU8|1|A|C|392
6BU8|1|A|A|393

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16