3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GA*UAC
Length
5 nucleotides
Bulged bases
6BU8|1|A|A|1394
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BU8_149 not in the Motif Atlas
Homologous match to IL_6CZR_147
Geometric discrepancy: 0.1955
The information below is about IL_6CZR_147
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

6BU8|1|A|G|922
6BU8|1|A|A|923
*
6BU8|1|A|U|1393
6BU8|1|A|A|1394
6BU8|1|A|C|1395

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain E
30S ribosomal protein S5

Coloring options:


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