3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC
Length
35 nucleotides
Bulged bases
6BU8|1|01|U|2132, 6BU8|1|01|C|2164, 6BU8|1|01|A|2171, 6BU8|1|01|U|2172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6BU8|1|01|G|2124
6BU8|1|01|G|2125
6BU8|1|01|A|2126
6BU8|1|01|G|2127
6BU8|1|01|G|2128
6BU8|1|01|C|2129
6BU8|1|01|U|2130
6BU8|1|01|U|2131
6BU8|1|01|U|2132
6BU8|1|01|G|2133
6BU8|1|01|A|2134
6BU8|1|01|A|2135
6BU8|1|01|G|2136
6BU8|1|01|U|2137
*
6BU8|1|01|A|2154
6BU8|1|01|U|2155
6BU8|1|01|G|2156
6BU8|1|01|G|2157
6BU8|1|01|A|2158
6BU8|1|01|G|2159
6BU8|1|01|C|2160
6BU8|1|01|C|2161
6BU8|1|01|G|2162
6BU8|1|01|A|2163
6BU8|1|01|C|2164
6BU8|1|01|C|2165
6BU8|1|01|U|2166
6BU8|1|01|U|2167
6BU8|1|01|G|2168
6BU8|1|01|A|2169
6BU8|1|01|A|2170
6BU8|1|01|A|2171
6BU8|1|01|U|2172
6BU8|1|01|A|2173
6BU8|1|01|C|2174

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 03
50S ribosomal protein L1
Chain X
Transfer RNA; tRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1729 s