IL_6BU8_187

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_187 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.139

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6BU8|1|A|U|409
6BU8|1|A|G|410
6BU8|1|A|A|411
6BU8|1|A|A|412
6BU8|1|A|G|413
6BU8|1|A|A|414
6BU8|1|A|A|415
6BU8|1|A|G|416
*
6BU8|1|A|U|427
6BU8|1|A|G|428
6BU8|1|A|U|429
6BU8|1|A|A|430
6BU8|1|A|A|431
6BU8|1|A|A|432
6BU8|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4