IL_6BU8_192

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6BU8|1|01|U|276, 6BU8|1|01|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_192 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2445

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6BU8|1|01|C|274
6BU8|1|01|C|275
6BU8|1|01|U|276
6BU8|1|01|G|277
6BU8|1|01|A|278
6BU8|1|01|A|279
6BU8|1|01|U|280
6BU8|1|01|C|281
*
6BU8|1|01|G|359
6BU8|1|01|U|360
6BU8|1|01|G|361
6BU8|1|01|A|362
6BU8|1|01|G|363

Current chains

Chain 01

23S ribosomal RNA

Nearby chains