IL_6BUW_033

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0899

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6BUW|1|QA|C|779
6BUW|1|QA|A|780
6BUW|1|QA|A|781
6BUW|1|QA|A|782
6BUW|1|QA|C|783
*
6BUW|1|QA|G|799
6BUW|1|QA|G|800
6BUW|1|QA|U|801
6BUW|1|QA|A|802
6BUW|1|QA|G|803

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QK

30S ribosomal protein S11

Chain RA

Large subunit ribosomal RNA; LSU rRNA