IL_6BUW_124

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6BUW|1|RA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_124 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.0939

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6BUW|1|RA|A|1669
6BUW|1|RA|C|1670
6BUW|1|RA|U|1671
6BUW|1|RA|C|1672
6BUW|1|RA|U|1673
6BUW|1|RA|G|1674
*
6BUW|1|RA|C|1990
6BUW|1|RA|U|1991
6BUW|1|RA|G|1992
6BUW|1|RA|U|1993

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14