IL_6BUW_131

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_131 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.194

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6BUW|1|RA|U|1851
6BUW|1|RA|C|1852
6BUW|1|RA|A|1853
6BUW|1|RA|A|1854
6BUW|1|RA|G|1855
*
6BUW|1|RA|C|1887
6BUW|1|RA|G|1888
6BUW|1|RA|A|1889
6BUW|1|RA|A|1890
6BUW|1|RA|G|1891

Current chains

Chain RA

23S rRNA

Nearby chains