IL_6BUW_189

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_189 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1134

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6BUW|1|XA|G|409
6BUW|1|XA|G|410
6BUW|1|XA|A|411
6BUW|1|XA|A|412
6BUW|1|XA|G|413
6BUW|1|XA|A|414
6BUW|1|XA|A|415
6BUW|1|XA|G|416
*
6BUW|1|XA|U|427
6BUW|1|XA|G|428
6BUW|1|XA|U|429
6BUW|1|XA|A|430
6BUW|1|XA|A|431
6BUW|1|XA|A|432
6BUW|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4