3D structure

PDB id
6BUW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6BUW|1|YA|G|801, 6BUW|1|YA|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BUW_251 not in the Motif Atlas
Geometric match to IL_4WF9_021
Geometric discrepancy: 0.0903
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_73855.1
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
10

Unit IDs

6BUW|1|YA|G|674
6BUW|1|YA|A|675
6BUW|1|YA|A|676
6BUW|1|YA|A|677
6BUW|1|YA|C|678
*
6BUW|1|YA|G|799
6BUW|1|YA|A|800
6BUW|1|YA|G|801
6BUW|1|YA|A|802
6BUW|1|YA|U|803
6BUW|1|YA|A|804
6BUW|1|YA|G|805
6BUW|1|YA|C|806

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15

Coloring options:


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