IL_6BUW_258

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6BUW|1|YA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_258 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.2886

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6BUW|1|YA|C|844
6BUW|1|YA|G|845
6BUW|1|YA|C|846
*
6BUW|1|YA|G|931
6BUW|1|YA|G|932
6BUW|1|YA|A|933
6BUW|1|YA|G|934

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30