IL_6BUW_292

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_292 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1203

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6BUW|1|YA|A|1469
6BUW|1|YA|G|1470
6BUW|1|YA|A|1471
6BUW|1|YA|A|1472
6BUW|1|YA|G|1473
*
6BUW|1|YA|U|1520
6BUW|1|YA|G|1521
6BUW|1|YA|G|1522
6BUW|1|YA|U|1523

Current chains

Chain YA

23S rRNA

Nearby chains