3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GAG*CUCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_063 not in the Motif Atlas
Geometric match to IL_3PDR_004
Geometric discrepancy: 0.3046
The information below is about IL_3PDR_004
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
Major groove platform
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

6BZ6|1|RA|G|43
6BZ6|1|RA|A|44
6BZ6|1|RA|G|45
*
6BZ6|1|RA|C|433
6BZ6|1|RA|U|434
6BZ6|1|RA|C|435
6BZ6|1|RA|C|436

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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