IL_6BZ6_143

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6BZ6|1|RA|G|2112, 6BZ6|1|RA|U|2113, 6BZ6|1|RA|A|2114, 6BZ6|1|RA|G|2115, 6BZ6|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_143 not in the Motif Atlas

Geometric match to IL_3NJ7_003

Geometric discrepancy: 0.2673

The information below is about IL_3NJ7_003

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6BZ6|1|RA|G|2110
6BZ6|1|RA|C|2111
6BZ6|1|RA|G|2112
6BZ6|1|RA|U|2113
6BZ6|1|RA|A|2114
6BZ6|1|RA|G|2115
6BZ6|1|RA|G|2116
6BZ6|1|RA|A|2117
6BZ6|1|RA|U|2118
6BZ6|1|RA|A|2119
6BZ6|1|RA|G|2120
6BZ6|1|RA|G|2121
*
6BZ6|1|RA|C|2177
6BZ6|1|RA|C|2178
6BZ6|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains