3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_229 not in the Motif Atlas
Geometric match to IL_5VCI_002
Geometric discrepancy: 0.1376
The information below is about IL_5VCI_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6BZ6|1|XA|G|1405
6BZ6|1|XA|U|1406
6BZ6|1|XA|C|1407
*
6BZ6|1|XA|G|1494
6BZ6|1|XA|U|1495
6BZ6|1|XA|C|1496

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XV
Transfer RNA; tRNA
Chain XX
messenger RNA
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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