3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GGGAG*CGUGGAUC
Length
13 nucleotides
Bulged bases
6BZ6|1|YA|G|101
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_239 not in the Motif Atlas
Homologous match to IL_7RQB_004
Geometric discrepancy: 0.0861
The information below is about IL_7RQB_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.2
Basepair signature
cWW-tSS-L-tSH-L-R-R-cWW-L
Number of instances in this motif group
18

Unit IDs

6BZ6|1|YA|G|81
6BZ6|1|YA|G|82
6BZ6|1|YA|G|83
6BZ6|1|YA|A|84
6BZ6|1|YA|G|85
*
6BZ6|1|YA|C|97
6BZ6|1|YA|G|98
6BZ6|1|YA|U|99
6BZ6|1|YA|G|101
6BZ6|1|YA|G|102
6BZ6|1|YA|A|103
6BZ6|1|YA|U|104
6BZ6|1|YA|C|105

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y2
50S ribosomal protein L29
Chain YY
50S ribosomal protein L24

Coloring options:


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