3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_242 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.0547
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6BZ6|1|YA|U|239
6BZ6|1|YA|G|240
6BZ6|1|YA|A|241
6BZ6|1|YA|G|242
6BZ6|1|YA|U|243
6BZ6|1|YA|A|244
6BZ6|1|YA|G|245
*
6BZ6|1|YA|C|253
6BZ6|1|YA|G|254
6BZ6|1|YA|A|255
6BZ6|1|YA|A|256
6BZ6|1|YA|A|257
6BZ6|1|YA|G|258

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y8
50S ribosomal protein L35
Chain YP
50S ribosomal protein L15

Coloring options:


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