IL_6BZ6_302

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6BZ6|1|YA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_302 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.125

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6BZ6|1|YA|C|1686
6BZ6|1|YA|G|1687
6BZ6|1|YA|U|1688
6BZ6|1|YA|A|1689
6BZ6|1|YA|A|1690
6BZ6|1|YA|C|1691
*
6BZ6|1|YA|G|1696
6BZ6|1|YA|G|1697
6BZ6|1|YA|A|1698
6BZ6|1|YA|G|1699
6BZ6|1|YA|A|1700
6BZ6|1|YA|A|1701
6BZ6|1|YA|G|1702

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2