3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
6BZ6|1|YA|G|1801, 6BZ6|1|YA|G|1816, 6BZ6|1|YA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_304 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0768
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

6BZ6|1|YA|U|1798
6BZ6|1|YA|G|1799
6BZ6|1|YA|C|1800
6BZ6|1|YA|G|1801
6BZ6|1|YA|A|1802
6BZ6|1|YA|A|1803
6BZ6|1|YA|C|1804
*
6BZ6|1|YA|G|1813
6BZ6|1|YA|G|1814
6BZ6|1|YA|A|1815
6BZ6|1|YA|G|1816
6BZ6|1|YA|G|1817
6BZ6|1|YA|U|1818
6BZ6|1|YA|A|1819
6BZ6|1|YA|U|1820
6BZ6|1|YA|A|1821

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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